Poster List
| 1`3 | Demonstration |
| 4`25 | sequence analysis & genomics |
| 26`29 | chemoinformatics & drug design |
| 30`42 | protein & biomolecules (function & structure) |
| 43`46 | cellular system & bioprocess |
| 47`51 | others |
Poster session@ :16:30 - 18:15, Wednesday, October 31 Λ for odd numbered posters.
Poster sessionA :16:00 - 17:30, Thursday, November 1 Λ for even numbered posters.
| sequence analysis & genomics | |
|---|---|
| 4 | Framework for prediction of RNA-RNA interactions Kiyoshi Asai, Satoshi Yamasaki, Tomoshi Kameda, Goro Terai, Michiaki Hamada |
5 | A graphical exon model for splice site sensitive RNA-seq mapping with integration of variable transcriptional evidences Toutai Mitsuyama |
6 | Direct updating of an RNA base-pairing probability matrix with marginal probability constraints Michiaki Hamada |
7 | Assessing accuracy of predicted genes by gene-structure-aware multiple protein sequence alignment Osamu Gotoh, Mariko Morita |
8 | PBSIM: PacBio reads simulator - toward accurate genome assembly Yukiteru Ono, kiyoshi Asai, michiaki Hamada |
9 | Splice Junction Mapping of Middle-to-Long RNA-seq Reads Chao Zeng, Hiroaki Iwata, Natsuhiro Ichinose, Tetsushi Yada, Osamu Gotoh |
10 | A quantitation and visualization technique for understanding high dimensional distribution of RNA structures Ryota Mori, Michiaki Hamada, Kiyoshi Asai |
11 | Large-scale similarity search for noncoding RNAs using sequence kernels and locality-sensitive hashing Yutaka Saito, Kengo Sato, Yasubumi Sakakibara |
12 | Enumerating DNA-binding motifs from ChIP-seq data Haruka Ozaki, Wataru Iwasaki, Toshihisa Takagi |
13 | What is determinant of mitochondrial localizing mRNA ? Kenichiro Imai, Noriyuki Sakiyama, Thomas Poulsen, Martin C. Frith, Toutai Mituyama, Kentaro Tomii, Paul Horton |
14 | A probabilistic model for extracting highly reliable haplotype regions in single individual haplotyping Hirotaka Matsumoto, Hisanori Kiryu |
15 | Recent mitochondrial DNA insertion marks species-specific open chromatin regions in primate genomes Junko Tsuji, Paul Horton |
16 | An assembling pipeline parallelized by dividing short reads using slideSort program Aya yoshizawa, Goro terai, Kiyoshi asai |
17 | Bisulfighter: pipeline for accurate estimation of cytosine methylation levels from bisulfite-converted reads Junko Tsuji, Toutai Mitsuyama |
18 | Difference in splicing mechanisms between alternative and constitutive exons Hiroaki Iwata, Tetsuya Sato, Mikita Suyama |
19 | Plus ca change: evolutionary sequence divergence predicts protein sub-cellular localization signals Yoshinori Fukasawa, Ross KK Leung, Stephen KW Tsui, Paul Horton |
20 | Semi-supervised Learning Approach to Predict RNA Secondary Structure Haruka Yonemoto, Michiaki Hamada, Kiyoshi Asai |
21 | An algorithm for computing structural length of RNA Yuki Kashihara, Hisanori Kiryu |
22 | Reference Free Approach for Detecting Chromosomal Rearrangement Edward Wijaya, Kana Shimizu, Kiyoshi Asai, Michiaki Hamada |
23 | An Approximate Bayesian Approach to Mapping Paired-End DNA Reads to a Reference Genome Anish Man Singh Shrestha, Martin C. Frith |
24 | A mostly traditional approach improves alignment of bisulfite-converted DNA. Martin C. Frith |
25 | Utilizing information in low-complexity regions when detecting homologous regions of biological sequences Thomas M. Poulsen, Martin C. Frith, Paul Horton |
| chemoinformatics & drug design | |
|---|---|
| 26 | In silico screening for inhibitors of the PA-PB1 interaction Takatsugu Hirokawa, Miwa Satou |
27 | New approach to virtual screening using MD simulation and concavity shape matching with ligand binding pocket Chie Motono |
28 | Developing Privacy-preserving database search protocol for chemical compound libraries Kana Shimizu, Michiaki Hamada, Koji Tsuda, Takatsugu Hirokawa, Kiyoshi Asai |
29 | An efficient computational method for calculating ligand binding affinities. Atsushi Suenaga, Noriaki Okimoto, Yoshinori Hirano, Kazuhiko Fukui |
| protein & biomolecules (function & structure) | |
|---|---|
| 30 | A Hypothesis on the Molecular Structure of Concept and Grammar Kumon Kimiaki Tokumaru |
31 | Analysis of enzyme structures and functions Nozomi Nagano |
32 | Analysis of Functional DIvergence of Chemokine Receptor Family Hiroyuki Toh, Wataru Nemoto, Hiromi Daiyasu |
33 | An investigation of structural profiles around target sites of RNA binding proteins Tsukasa Fukunaga, Hisanori Kiryu |
34 | Computational Study of Opsin G-protein Interaction Minoru Sugihara, Ana-Nicoleta Bondar, Makiko Suwa |
35 | Molecular dynamics study of statistics of protein genus Masanori Yamanaka |
36 | Tertiary structure prediction of RNA-RNA interacting structure using short fragment structures and secondary structure information Satoshi Yamasaki |
37 | PoSSuM: a relational database for functional annotation of proteins Jun-Ichi Ito, Yasuo Tabei, Kana Shimizu, Koji Tsuda, Kentaro Tomii |
38 | STRUCTURE-FUNCTION RELATIONSHIP IN OLFACTORY RECEPTORS AND DISCRIMINATION OF EFFLUX PROTEINS M. Michael Gromiha, Y-Y. Ou, R. Sowdhamini, D. Velmurugan, Kazuhiko Fukui |
39 | Orphan proteins and domains Rauan Sagit, Sara Light, Walter Basile, Arne Elofsson |
40 | A Novel Approach to Calpain Cleavage Prediction David A. duVerle, Hiroyuki Sorimachi, Yasuko Ono, Hiroshi Mamitsuka |
41 | Graph cut algorithms for classifying single particle protein images Yutaka Ueno, Kazunori Kawasaki |
42 | Classification of soluble/insoluble proteins with ESPRESSO Shuichi Hirose, Tamotsu Noguchi |
| cellular system & bioprocess | |
|---|---|
| 43 | Phenotype-Difference Oriented Analysis for Detecting Molecular Functions from Omics Data Shigeru Saito, Katsuhisa Horimoto |
44 | Enhanced Trainability of Genetic Oscillators by Period Mismatch Yoshihiko Hasegawa, Masanori Arita |
45 | Gene expression stage detection in nematode development Daisuke Tominaga |
46 | Network Inference of AP pattern formation system in D.melanogaster Sachiyo Aburatani |
| others | |
|---|---|
| 47 | Fast Graph Search with Succinct Trees Koji Tsuda |
48 | An integrative analysis of nonstationary gene-to-metabolite networks Ryoko Morioka, Hiroki Takahashi, Ryosuke Ito, Taku Oshima, Md. Altaf-UI-Amin, Naotake Ogasawara, Shigehiko Kanaya |
49 | Metabolic Flux and Convex Polytope Masamichi Sato, Kenji Fukumizu |
50 | Computational Prediction of miRNA Regulations in Whole Brain of Mouse Using Gene Expression Data Risa Kawaguchi, Hisanori Kiryu |
51 | RNA 3D structure prediction by using coarse-grained molecular dynamics simulation Tomoshi Kameda |