Computational Biology Research Center[CBRC]

Yabuki, Y., Mukai, Y., Suwa, M.: "GENIUS II: A Database System Including Complete Genome ORFs that are Assigned to Protein Three-Dimensional Domains", Genome informatics, 13, pp.517-518 (2002). ■Free Full Text Paper(PDF) on the Journal Website.
Kin, T., Tsuda, K., Asai, K.: "Marginalized kernels for RNA sequence data analysis", Genome informatics, 13, pp.112-122 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Saeki, S., Asai, K., Takahashi, K., Ueno, Y., Isono, K., Iba, H.: "Inference of Euler angles for single particle analysis by using Genetic Algorithms", Genome informatics, 13, pp.133-142 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Suenaga, A., Okimoto, N., Ebisuzaki, T.: "Refolding molecular dynamics simulations of small- and middle-sized proteins in an explicit solvent", Molecular Simulation, 28(Number 4 / 2002), pp.337-357 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.
Sekijima, M., Takasaki, S., Nakamura, S., Shimizu, K.: "Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment", Proceeding (373) Parallel and Distributed Computing and Systems - 2002, pp.380-385 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.
Gromiha, M.M., Thomas, S., Santhosh, C.: "Role of cation-pi interactions to the stability of thermophilic proteins", Preparative Biochemistry & Biotechnology, 32(4), pp.355-362 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
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Asai, R., Nakamura, C., Ikebukuro, K., Karube, I., Miyake, J.: "Detection technique of asymmetric RT-PCR-based amplified single-stranded DNA and its application to biosensor for detection of mRNA for cyanobacteria, Anabaena variabilis", Biotechnology Letters, 24(20), pp.1677-1682 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.
Kumarevel, T.S., Gromiha, M.M., Selvaraj, S., Gayatri, K., Kumar, P.K.: "Influence of Medium and Long-range Interactions in Different Folding types of Globular Proteins", Biophysical Chemistry, 99(2), pp.189-198 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
Arita, M., Tsuda, K., Asai, K.: "Modeling splicing sites with pairwise correlations", Bioinformatics, 18(Suppl 2), pp.S27-S34 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Sasaki, T., Sonoyama, M., Mukai, Y., Nakazawa, C., Mitaku, S.: "Structural stability of bacteriorhodopsin solubilized by Triton X-100", Journal of Photoscience, 9(2), pp.293-295 (2002).
Tsuda, K., Kawanabe, M., Ratsch, G., Sonnenburg, S., Muller, K.-R.: "A new discriminative kernel from probabilistic models", Neural Computation, 14(10), pp.2397-4214 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
Tsuda, K., Kawanabe, M., Raetsch, G., Sonnenburg, S., Mueller, K.-R.: "A New Discriminative Kernel from Probabilistic Models", Advances in Neural Information Processing Systems, 14, pp.977-984 (2002). ■Free Full Text Paper(PDF) on the Journal Website.
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Husimi, Y., Aita, T., Tabuchi, I.: "Correlated Flexible Molecular Coding and Molecular Evolvability", Journal of Biological Physics, 28(3), pp.499-507 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.
Nagano, N., Orengo, C.A., Thornton, J.M.: "One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions", Journal of Molecular Biology, 321(5), pp.741-765 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
Gromiha, M.M., Oobatake, M., Kono, H., Uedaira, H., Sarai, A.: "Importance of mutant position in Ramachandran plot for predicting protein stability of surface mutations", Biopolymers, 64(4), pp.210-220 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
Tsuda, K., Kawanabe, M.: "The Leave-One-Out Kernel", Artificial Neural Networks - ICANN 2002: International Conference, Madrid, Spain, August 28-30, 2002. Proceedings, 2415, pp.727-732 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.
Tsuda, K., Kin, T., Asai, K.: "Marginalized kernels for biological sequences", Bioinformatics, 18(Supple 1), pp.S268-S275 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Aita, T., Hamamatsu, N., Nomiya, Y., Uchiyama, H., Shibanaka, Y., Husimi, Y.: "Surveying a local fitness landscape of a protein with epistatic sites for the study of directed evolution", Biopolymers, 64(2), pp.95-105 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
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Onizuka, K., Noguchi, T., Akiyama, Y., Matsuda, H.: "Using Data Compression for Multidimensional Distribution Analysis", IEEE Intelligent Systems, 17(3), pp.48-54 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.
Ahmad, S., Gromiha, M.M.: "NETASA: neural network based prediction of solvent accessibility", Bioinformatics, 18(6), pp.819-824 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Mitaku, S., Hirokawa, T., Tsuji, T.: "Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces", Bioinformatics, 18(4), pp.608-616 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Sarai, A., Gromiha, M.M., An, J., Prabakaran, P., Selvaraj, S., Kono, H., Oobatake, M., Uedaira, H.: "Thermodynamic databases for proteins and protein-nucleic acid interactions, Biopolymers, 61(2), pp.121-126 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
Yoshida, T., Nishimura, T., Aida, M., Pichierri, F., Gromiha, M.M., Sarai, A.: "Evaluation of FREE energy landscape for base-amino acid interactions using ab initio force field and extensive sampling", Biopolymers, 61(1), pp.84-95 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
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Arita, M., Kobayashi, S.: "DNA Sequence Design Using Templates", New Generation Computing, 20, pp.263-277 (2002).
Nishimura, S.I.: "A predator's selection of an individual prey from a group", Biosystems, 65(1), pp.25-35 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal. ■PubMed
Nakano, T., Kaminuma, T., Sato, T., Fukuzawa, K., Akiyama, Y., Uebayasi, M., Kitaura, K.: "Fragment molecular orbital method: use of approximate electrostatic potential", Chemical Physics Letters, 351(5-6), pp.475-480 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.
Gromiha, M.M., Uedaira, H., An, J., Selvaraj, S., Prabakaran, P., Sarai, A.: "ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0", Nucleic Acids Research, 30(1), pp.301-302 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Sakata, K., et al. (incl. Nagasaki, H. from CBRC): "RiceGAAS: an automated annotation system and database for rice genome sequence", Nucleic Acids Research, 30(1), pp.98-102 (2002). ■Free Full Text Paper(PDF) on the Journal Website. ■PubMed
Tsuda, K., Sugiyama, M., Miller, K.-R.: "Subspace information criterion for nonquadratic regularizers-Modelselection for sparse regressors", IEEE Transactions on Neural Networks, 13(1), pp.70-80 (2002). ■Full Text Paper(PDF) on the Journal Website. You need the license for the electrical journal.

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