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• HPCI Seminar

HPCI Seminar 2011

• Department of Computational Biology, Graduate School of Frontier Sciences,
  The University of Tokyo
  Winter Semester Course in 2011 "Special Lecture on Computational Biology I" Course code 47200-13
• This seminar is supported by "Human resources fostering program, HPCI (High Performance Computing Infrastructure) Strategic Promotion Program: Area 1 Prediction of Life science, Medicine and Drug design platform". >> Link to HPCI Strategic Promotion Program: Area 1
  This seminar is open to public. Guidance about how to attend will be shown on other web page soon.
  
  Venue* ：CBRC 8F Collaboration Corner or 10F M Meeting Room Frontier Sciences, Computational Biology Experiment Bldg. 2F seminar room at the Kashiwa Campus, the University of Tokyo Faculty of Science Bldg. 3 412 seminar room at the Hongo Campus, the University of Tokyo.
  Time : 14:45 - 16:25 *
  
  * To Kashiwa and Hongo Campuses, lectures are delivered through a teleconference system from CBRC.
  * Only students who have registered for Special Lecture on Computational Biology I can attend this seminar at Kashiwa and Hongo Campuses. For other people who would like to attend this seminar, CBRC is open.
  * Note. On the 1st time of this seminar (7th October, 2011), seminar time will be changed to 16:00 - 17:40, and the 1st half of the lecture (** denoted) will be given in Kashiwa Campus, and delivered to CBRC and Hongo campus through teleconference system. The 2nd half will be delivered from CBRC.
  * ...This mark shows that the seminar with this mark is given in English. The seminar without this mark is given in Japanese.
• No.1 Friday, October 7th, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Kiyoshi Asai ** (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology / Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo) "Opening Remarks"
  
  Hisanori Kiryu ** (Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo) "On Algorithms for Computing Thermodynamics Entropy of RNA Secondary Structures"
  [Abstract PDF]
  Michiaki Hamada (Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo) "Maximizing Expected Accuracy estimations in Bioinformatics"
  [Abstract PDF]
• No.2 Friday, October 14th, 2011.  Venue：CBRC 10F M Meeting Room
  
  Paul Horton (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "fasta,fastq data processing with Perl"
  [Abstract PDF]
  Makiko Suwa (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Research Towards the Unified Understanding of the Olfactory System"
  [Abstract PDF]
• No.3 Friday, October 21th, 2011.  Venue：CBRC 10F M Meeting Room
  
  Martin Frith (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Pair-wise Sequence Comparison: Old and New Solutions"
  [Abstract PDF] [Slide PDF]
• No.4 Friday, October 28th, 2011.  Venue：CBRC 10F M Meeting Room
  
  Kana Shimizu (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "All Pairs Similarity Search in Edit Distance"
  [Abstract PDF]
  Kentaro Tomii (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Cross Profile Analysis and Its Applications"
  [Abstract PDF]
• No.5 Friday, November 4th, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Kazutaka Katoh (Immunology Frontier Research Center, Osaka University) "Multiple Sequence Alignment"
  [Abstract PDF]
  Hiroyuki Toh (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Analysis of Protein-Protein Interaction with Multiple Amino Acid Sequence Alignment"
  [Abstract PDF]
• No.6 Friday, November 11th, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Toutai Mituyama (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Identification of Secondary Structural Elements in Mammalian Genomes"
  [Abstract PDF]
  Tamotsu Noguchi (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "The Metods for Predicting Protein Expression/Solubility and Protein Disordered Regions"
  [Abstract PDF]
• No.7 Friday, November 18th, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Nozomi Nagano (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Structures and Functions of Enzymes"
  [Abstract PDF]
  Koji Tsuda (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Fast Search Algorithms Applied to Bioinformatics"
  [Abstract PDF]
• No.8 Friday, November 25th, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Atsushi Suenaga (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Molecular Simulation of Biomolecules - Toward the Computer-Aided Drug Design -"
  [Abstract PDF] [Slide PDF]
• No.9 Friday, December 2nd, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Sachiyo Aburatani (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "A Statistical Approach for Inferring Regulatory Networks from Gene Expression Profiles"
  [Abstract PDF]
  Wataru Fujibuchi (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Stem Cell Informatics and Drug Discovery"
  [Abstract PDF]
• No.10 Friday, December 9th, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Daisuke Tominaga (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Time Series Analysis of Gene Expression Data"
  [Abstract PDF]
  Tomoshi Kameda (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Molecular Dynamicis Simulation as Drug Discovery Technology"
  [Abstract PDF]
• No.11 Friday, December 16th, 2011.  Venue：CBRC 8F Collaboration Corner
  
  Takatsugu Hirokawa (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Drug discovery using pharmacoinformatics"
  [Abstract PDF]
  Chie Motono (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Development of Structure Prediction Pipeline for Eukaryotic Proteins and SAHG Database"
  [Abstract PDF]
• No.12 Friday, January 13th, 2012.  Venue：CBRC 8F Collaboration Corner
  
  Kazuhiko Fukui (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "Development of Infrastructure Technologies for Bioinformatics Information"
  [Abstract PDF]
  Katsuhisa Horimoto (Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology) "A Method to Narrow Down the Candidates of Causal Genes in Diseases by .an Approach of Computational Systems Biology"
  [Abstract PDF]