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  • 誌上発表・査読無し：2004年

論　文（誌上発表・査読無し：2004年）

  • Noguchi, T., Hirose, S., Shimizu, K., Tomii, K.:"Prediction of disordered coil regions in proteins by threading and secondary structure prediction", CASP6, pp.205(2004).
  • Bava, A., Gromiha, M.M., Uedaira, H., Kitajima, K., Sarai, A.:"Latest developments in ProTherm: Thermodynamic database for proteins and mutants", Journal of the biophysical society of Japan, 44(S1), pp.S206(2004).
  • Kumar, S., Gromiha, M.M., Prabakaran, P., Uedaira, H., Kitajima, K.:"Latest developments in ProNIT: Thermodynamic database for protein-nucleic acid interactions", Journal of the biophysical society of Japan, 44(S1), pp.S139(2004).
  • 諏訪 牧子:"GPCRのバイオインフォマテイクス：Orphan受容体の機能予測に向けて", 日本薬理学雑誌, 124, 補冊, pp.S57(2004).
  • 諏訪 牧子:"ノーベル生理学・医学賞：におい受容体の発見および嗅覚システムの解明", パリティ (2004).
  • Uedaira, H., Gromiha, M.M., Sarai, A.:"Databases for Biomolecules: Proteins and Mutants", Comprehensive Handbook of Calorimetry and Thermal Analysis, pp.276-279(2004).
  • 富永 大介:"タンパク質発現時系列データからの遺伝子量の推定とモデリング", 日本応用数理学会年会講演予稿集, pp.346-347(2004).
  • Selvaraj, S., Gromiha, M.M.:"Hydrophobic cluster formation in the folding transition state of two-state proteins", Proc. 4th KIAS Conference on protein structure and function, pp.P1(2004).
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  • Gromiha, M.M.:"Inter-residue Interactions in Protein Structures: Implications for Folding and Stability", Proc. 4th KIAS conference on protein structure and function, pp.15(2004).
  • 秋山 泰:"超高速計算機で分子シミュレーションの壁を砕く", Bionics, 0, pp.42-44(2004). ■ジャーナルサイトのFull Text Paper(PDF)／どなたでもご覧になれます。
  • Vert, J.-P., Tsuda, K., Schoelkopf, B.:"A Primer on Kernel Methods Kernel", Methods in Computational Biology, pp.35-70(2004). ■ジャーナルサイトのFull Text Paper(PDF)/閲覧にはオンラインジャーナルの契約等が必要です。
  • Kin, T., Kato, T., Tsuda, K.:"Protein Classification via Kernel Matrix Completion", Kernel Methods in Computational Biology, pp.261-274(2004). ■ジャーナルサイトのFull Text Paper(PDF)/閲覧にはオンラインジャーナルの契約等が必要です。
  • Sekijima, M., Motono, C., Noguchi, T., Kaneko, K., Akiyama, Y.:"Structural Changes in flexible region of the Prion Protein induced by P102L Substitution: Investigation through Molecular Dynamics Simulations", PROTEIN SCIENCE, 13, suppl. 1, pp.170(2004).
  • Sarai, A., Ahmad, S., Gromiha, M.M., Kono, H.:"Genome-scale Prediction of Transcription Factors and their Targets Proceedings of the Fourth International", Conference on Bioinformatics of Genome Regulation and Structure, 1, pp.191-194(2004). ■ジャーナルサイトのFull Text Paper(PDF)／どなたでもご覧になれます。
  • Sekijima, M., Motono, C., Noguchi, T., Kaneko, K., Akiyama, Y.@:"The Molecular Dynamics Simulations of the Conformational Transition of Prion Protein from its Cellular Form to the Anomalous Form using the Earth Simulator", Annual Report of the Earth Simulator Center April 2003 - March 2004, pp.177-174(2004). ■ジャーナルサイトのFull Text Paper(PDF)／どなたでもご覧になれます。
  • Gromiha, M.M., Pujadas, G., Magyar, C., Selvaraj, S., Simon, I.:"Locating the stabilizing residues in (alpha/beta)8 barrel proteins based on hydrophobicity, long-range interactions, and sequence conservation", Proteins: Structure, Function, and Genetics, 55(2), pp.316-329(2004). ■ジャーナルサイトのFull Text Paper(PDF)/閲覧にはオンラインジャーナルの契約等が必要です。
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  • Sekijima, M., Motono, C., Noguchi, T., Kaneko, K., Akiyama, Y.:"Molecular Dynamics Simulation of Wild-Type and Mutant Human Prion Protein: Effect of Pro102Leu", 1st Pacific-Rim International Conference on Protein Science (2004).
  • Sarai, A., Ahmad, S., Gromiha, M.M., Kono, H.:"Methods for predicting transcription factors and their targets", Proc. New approaches to structure and function of proteins in pacific-rim, pp.223(2004).
  • Kumar, S., Prabakaran, P., Uedaira, H., Gromiha, M.M., Kitajima, K., Sarai, A.:"Thermodynamic database for protein-nucleic acid interactions (ProNIT): new developments", Proc. New approaches to structure and function of proteins in pacific-rim, pp.198(2004).
  • Bava, A., Gromiha, M.M., Uedaira, H., Kitajima, K., Sarai, A.:"ProTherm: Thermodynamic database for proteins and mutants", Proc. New approaches to structure and function of proteins in pacific-rim(2004).
  • Gromiha, M.M., Selvaraj, S.:"Folding and Stability of Proteins: Structural Analysis Based on Inter-residue Contacts", Proc. New approaches to structure and function of proteins in pacific-rim, pp.163(2004).
  • Kono, H., Gromiha, M.M., Selvaraj, S., Sarai, A.:"Direct or Indirect Readout in Protein-DNA Recognition?", Biophysical Journal, 2004 Abstract Issue, pp.418a(2004). ■ジャーナルサイトのFull Text Paper(PDF)／どなたでもご覧になれます。
  • 池田 和由:"カメレオン配列の自由エネルギー地形", AIST Today, 4(1), pp.14(2004). ■ジャーナルサイトのFull Text Paper(PDF)／どなたでもご覧になれます。
  • Gromiha, M.M., Ahmad, S., Suwa, M.:"Web-based Prediction of Membrane Spanning b-strands in Outer Membrane Proteins", Currents in Comp. Mol. Biol., 2004, pp.414-415(2004).
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