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  • 誌上発表・査読有り：2011年

論　文（誌上発表・査読有り：2011年）

  • Aburatani S.,:"Application of structure equation modeling for inferring a serial transcriptional regulation in yeast.", Gene Regul Syst Bio., 5:75-88. doi: 10.4137/GRSB.S7569.(2011). headAbstract
  • Hatano A, Chiba H, Moesa HA, Taniguchi T, Nagaie S, Yamanegi K, Takai-Igarashi T, Tanaka H, Fujibuchi W.,:"CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses.", Database (Oxford) bar046. doi: 10.1093/database/bar046.(2011). headAbstract
  • Sugihara, M., Fujibuchi, W., Suwa, M.: "Structural elements of the signal propagation pathway in squid rhodopsin and bovine rhodopsin.", JOURNAL OF PHYSICAL CHEMISTRY B, 115(19) pp.6172-6179 (2011). headAbstract (PubMed) headJournal Site
  • Suwa, M., Sugihara, M., Ono, Y.: "Functional and Structural Overview of G-Protein-Coupled Receptors Comprehensively Obtained from Genome Sequence.", Pharmaceuticals, 4(4) pp.652-664 (2011). headJournal Site
  • Hirose, S., Kawamura, Y., Mori, M., Yokota, K., Noguchi, T., Goshima, N.: "Development and evaluation of data-driven designed tags (DDTs) for controlling protein solubility.", NEW BIOTECHNOLOGY, 28(3) pp.225-231 (2011). headAbstract (PubMed) headJournal Site
  • Yabuuchi, H., Niijima, S., Takematsu, H., Ida, T., Hirokawa, T., Hara, T., Ogawa, T., Minowa, Y., Tsujimoto, G., Okuno, Y.: "Analysis of multiple compound-protein interactions reveals novel bioactive molecules.", MOLECULAR SYSTEMS BIOLOGY, 7 pp.472 (2011). headAbstract (PubMed) headJournal Site
  • Kinouchi, M., Miura, K., Mizoi, T., Ishida, K., Fujibuchi, W., Ando, T., Yazaki, N., Saito, K., Shiiba, K., Sasaki, I.: "Infiltration of CD14-positive macrophages at the invasive front indicates a favorable prognosis in colorectal cancer patients with lymph node metastasis..", HEPATO-GASTROENTEROLOGY, 58(106) pp.352-358 (2011). headAbstract (PubMed)
  • KieｸH扉asa, S.M., Wan, R., Sato, K., Horton, P., Frith, M.C.: "Adaptive seeds tame genomic sequence comparison.", GENOME RESEARCH, 21(3) pp.487-493 (2011). headAbstract (PubMed) headJournal Site
  • Frith, M.C.: "A new repeat-masking method enables specific detection of homologous sequences.", NUCLEIC ACIDS RESEARCH, 39(4) pp.e23 (2011). headAbstract (PubMed) headJournal Site
  • Kumar, M., Gromiha, M.M., Raghava, G.P.: "SVM based prediction of RNA-binding proteins using binding residues and evolutionary information..", JOURNAL OF MOLECULAR RECOGNITION, 24(2) pp.303-313 (2011). headAbstract (PubMed) headJournal Site
  • Gromiha, M.M., Fukui, K.: "Scoring Function Based Approach for Locating Binding Sites and Understanding Recognition Mechanism of Protein-DNA Complexes.", JOURNAL OF CHEMICAL INFORMATION AND MODELING, 51(3) pp.721-729 (2011). headAbstract (PubMed) headJournal Site
  • Hamada M, Kiryu H, Iwasaki W, Asai K. "Generalized Centroid Estimators in Bioinformatics.", PLOS ONE, 6(2) (2011). headAbstract (PubMed) headJournal Site
  • Takigawa, I., Tsuda, K., Mamitsuka, H.: "Mining Significant Substructure Pairs for Interpreting Polypharmacology in Drug-Target Network.", PLOS ONE, 6(2) pp.e16999 (2011). headAbstract (PubMed) headJournal Site
  • Kato, T., Nagano, N.: "Discriminative Structural Approaches for Enzyme Active-Site Prediction.", BMC BIOINFORMATICS, 12(Suppl 1) pp.S49 (2011). headAbstract (PubMed) headJournal Site
  • Saito S, Hirokawa T, Horimoto K. "Discovery of chemical compound groups with common structures by a network analysis approach (affinity prediction method)..", JOURNAL OF CHEMICAL INFORMATION AND MODELING, 51(1) pp.61-68 (2011). headAbstract (PubMed) headJournal Site
  • Motono, C., Nakata, J., Koike, R., Shimizu, K., Shirota, M., Amemiya, T., Tomii, K., Nagano, N., Sakaya, N., Misoo, K., Sato, M., Kidera, A., Hiroaki, H., Shirai, T., Kinoshita, K., Noguchi, T., Ota, M.: "SAHG, a comprehensive database of predicted structures of all human proteins.", NUCLEIC ACIDS RESEARCH, 39(suppl 1) pp.D487-D493 (2011). headAbstract (PubMed) headJournal Site
  • Nemoto, W., Fukui, K., Toh, H.:"Database for GPCR oligomerization, GRIPDB - G-protein coupled Receptor Interaction Partners DataBase.", JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, 31(2), pp.1-19(2011).
  • Shimizu, K., Tsuda, K.:"SlideSort: All Pairs Similarity Search for Short Reads .", BIOINFORMATICS, 27(4), pp.464-470(2011). headAbstract headFull Text
  • Miura, K., Fujibuchi, W., Ishida, K., Naitoh, T., Ogawa, H., Ando, T., Yazaki, N., Watanabe, K., Haneda, S., Shibata, C., Sasaki, I.:"Inhibitor of Apoptosis Protein Family as Diagnostic Markers and Therapeutic Targets of Colorectal Cancer.", SURGERY TODAY, 41(2), pp.175-182(2011). headAbstract
  • Imai, K., Fujita, N., Gromiha, M.M., Horton, P.:"Eukaryote-wide sequence analysis of mitochondrial beta-barrel outer membrane proteins.", BMC GENOMICS, 12pp.79-(2011). headAbstract headFull Text
  • Ebina, T., Toh, H., Kuroda, Y.:"DROP: an SVM domain linker predictor trained with optimal features selected by random forest..", BIOINFORMATICS, 27(4), pp.487-494(2011). headPubMed
  • Georgii, E., Tsuda, K., Sch?lkopf, B.:"Multi-way set enumeration in weight tensors.", MACHINE LEARNING, 82(2), pp.123-155(2011). headAbstract
  • "Gromiha, M.M.: "Influence of long-range contacts and surrounding residues to the transition state structures of proteins", ANALYTICAL BIOCHEMISTRY, 408(1), pp.32-36(2011). headPubMed
  • Mukai, Y., Yoshizawa, M., Sasaki, T., Ikeda, M., Tomii, K., Hirokawa, T., Suwa, M.:"Discrimination of Golgi Type II Membrane Proteins Based on Their Hydropathy Profiles and the Amino Acid Propensities of Their Transmembrane Regions..", BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 75(1), pp.82-88(2011). headPubMed
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